PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g062680.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 401aa    MW: 43397.7 Da    PI: 6.8442
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g062680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.6e-3528168289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssa 82 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++          s+ +a++++ e+++ ++
  Sopim07g062680.0.1  28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigtaSAAAATNTNLEQEQAQK 118
                         79**************************************************************999988864322222222222222222 PP

                 TCP  83 snsssg...........................................k 89 
                         +++ ++                                            
  Sopim07g062680.0.1 119 QQEDNNfafqqgnvslfdnvagpsskraiesntasflppslesdaiadtI 168
                         22222245666666666665555555555555555555555555554441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3128200IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGT ASAAAATNTN LEQEQAQKQQ  120
EDNNFAFQQG NVSLFDNVAG PSSKRAIESN TASFLPPSLE SDAIADTIKS FFPMGSSTSA  180
NSSAMQFHSF QEPHMLSRAN SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ  240
GQAPAHFGGN TPLGFDTSGW SMHQRLRSWS DSREIGPGGS GGAVTGPGGY LFNSPPAPAL  300
LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSAIAIASGD PSNHHQAALS MYPSTIPGYG  360
FASEVGGFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0915710.0EF091571.1 Solanum lycopersicum lanceolate mRNA, complete cds.
GenBankEF0915730.0EF091573.1 Solanum lycopersicum lanceolate gene, complete cds.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234335.20.0cycloidea
SwissprotQ8LPR51e-102TCP4_ARATH; Transcription factor TCP4
TrEMBLA2I5C70.0A2I5C7_SOLLC; Lanceolate
STRINGSolyc07g062680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-88TCP family protein